521 lines
20 KiB
Python
521 lines
20 KiB
Python
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"""Pydantic models for SPARQL operations.
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This module provides Pydantic models for structured SPARQL queries
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that can be used with PydanticOutputParser for LLM integration.
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"""
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import logging
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from typing import Annotated, Any
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from typing import Literal as TypingLiteral
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from pydantic import BaseModel, BeforeValidator, Field
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from rdflib import BNode, Literal, Node, URIRef
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from ontocast.onto.constants import COMMON_PREFIXES
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from ontocast.onto.enum import SPARQLOperationType
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from ontocast.onto.rdfgraph import RDFGraph
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logger = logging.getLogger(__name__)
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# Convert COMMON_PREFIXES from Turtle format (with angle brackets) to SPARQL format (without)
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# Example: "<http://example.org/>" -> "http://example.org/"
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STANDARD_PREFIXES = {prefix: uri.strip("<>") for prefix, uri in COMMON_PREFIXES.items()}
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class SPARQLOperationModel(BaseModel):
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"""Pydantic model for a single SPARQL operation.
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Attributes:
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operation_type: Type of SPARQL operation (INSERT, UPDATE, DELETE)
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query: The SPARQL query string
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description: Optional description of the operation
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metadata: Optional metadata dictionary
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"""
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operation_type: SPARQLOperationType = Field(
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description="Type of SPARQL operation: INSERT, UPDATE, or DELETE"
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)
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query: str = Field(
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description="The complete SPARQL query string with proper syntax"
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)
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description: str = Field(
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default="", description="Optional description of the operation"
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)
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metadata: dict[str, Any] = Field(
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default_factory=dict,
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description="Optional metadata dictionary for the operation",
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)
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class StructuredSPARQLQueryModel(BaseModel):
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"""Pydantic model for structured SPARQL queries.
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Attributes:
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operations: List of SPARQL operations (INSERT, UPDATE, DELETE)
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namespaces: Dictionary mapping prefixes to URIs
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"""
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operations: list[SPARQLOperationModel] = Field(
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default_factory=list, description="List of SPARQL operations to execute"
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)
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namespaces: dict[str, str] = Field(
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default_factory=dict,
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description="Dictionary mapping namespace prefixes to URIs",
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)
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def get_summary(self) -> str:
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"""Get a summary of the structured query."""
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add_count = len(
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[
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.INSERT
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]
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)
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update_count = len(
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[
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.UPDATE
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]
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)
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remove_count = len(
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[
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.DELETE
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]
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)
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return (
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f"Structured SPARQL Query: "
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f"{add_count} ADD operations, "
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f"{update_count} UPDATE operations, "
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f"{remove_count} REMOVE operations"
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)
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def get_all_operations(self) -> list[SPARQLOperationModel]:
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"""Get all operations in execution order (INSERT, UPDATE, DELETE)."""
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# Sort operations by type: INSERT first, then UPDATE, then DELETE
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type_order = {
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SPARQLOperationType.INSERT: 0,
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SPARQLOperationType.UPDATE: 1,
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SPARQLOperationType.DELETE: 2,
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}
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return sorted(self.operations, key=lambda op: type_order[op.operation_type])
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def get_add_operations(self) -> list[SPARQLOperationModel]:
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"""Get all INSERT operations."""
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return [
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.INSERT
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]
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def get_update_operations(self) -> list[SPARQLOperationModel]:
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"""Get all UPDATE operations."""
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return [
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.UPDATE
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]
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def get_remove_operations(self) -> list[SPARQLOperationModel]:
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"""Get all DELETE operations."""
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return [
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op
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for op in self.operations
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if op.operation_type == SPARQLOperationType.DELETE
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]
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class OntologyUpdateReport(BaseModel):
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"""Report from ontology update process using structured SPARQL.
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Attributes:
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update_success: True if the ontology update was performed successfully
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structured_query: The structured SPARQL query used for the update
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add_count: Number of ADD operations
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update_count: Number of UPDATE operations
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remove_count: Number of REMOVE operations
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critique: Optional critique of the update process
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"""
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update_success: bool = Field(
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description="True if the ontology update was performed successfully, False otherwise"
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)
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structured_query: StructuredSPARQLQueryModel = Field(
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description="The structured SPARQL query used for the update"
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)
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add_count: int = Field(
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description="Number of ADD operations in the structured query"
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)
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update_count: int = Field(
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description="Number of UPDATE operations in the structured query"
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)
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remove_count: int = Field(
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description="Number of REMOVE operations in the structured query"
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)
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critique: str | None = Field(
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None, description="Optional critique or explanation of the update process"
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)
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class FactsUpdateReport(BaseModel):
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"""Report from facts update process using structured SPARQL.
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Attributes:
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update_success: True if the facts update was performed successfully
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structured_query: The structured SPARQL query used for the update
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add_count: Number of ADD operations
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update_count: Number of UPDATE operations
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remove_count: Number of REMOVE operations
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critique: Optional critique of the update process
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"""
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update_success: bool = Field(
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description="True if the facts update was performed successfully, False otherwise"
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)
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structured_query: StructuredSPARQLQueryModel = Field(
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description="The structured SPARQL query used for the update"
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)
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add_count: int = Field(
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description="Number of ADD operations in the structured query"
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)
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update_count: int = Field(
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description="Number of UPDATE operations in the structured query"
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)
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remove_count: int = Field(
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description="Number of REMOVE operations in the structured query"
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)
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critique: str | None = Field(
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None, description="Optional critique or explanation of the update process"
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)
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class FreshOntologyReport(BaseModel):
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"""Report from fresh ontology generation process.
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Attributes:
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generation_success: True if the ontology was generated successfully
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ontology_graph: The generated ontology as an RDFGraph
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ontology_score: Score 0-100 for ontology quality
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critique: Optional critique of the ontology generation
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"""
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generation_success: bool = Field(
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description="True if the ontology was generated successfully, False otherwise"
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)
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ontology_graph: RDFGraph = Field(
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default_factory=RDFGraph,
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description="The generated ontology as an RDFGraph in Turtle format",
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)
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ontology_score: float | None = Field(
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None, description="Score 0-100 for ontology quality and completeness"
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)
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critique: str | None = Field(
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None, description="Optional critique or explanation of the ontology generation"
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)
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class FreshFactsReport(BaseModel):
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"""Report from fresh facts generation process.
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Attributes:
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generation_success: True if the facts were generated successfully
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facts_graph: The generated facts as an RDFGraph
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facts_score: Score 0-100 for facts quality
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critique: Optional critique of the facts generation
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"""
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generation_success: bool = Field(
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description="True if the facts were generated successfully, False otherwise"
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)
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facts_graph: RDFGraph = Field(
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default_factory=RDFGraph,
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description="The generated facts as an RDFGraph in Turtle format",
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)
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facts_score: float | None = Field(
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None, description="Score 0-100 for facts quality and completeness"
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)
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critique: str | None = Field(
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None, description="Optional critique or explanation of the facts generation"
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)
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class TripleOp(BaseModel):
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"""Operation to modify triples in the RDF graph.
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This operation can insert or delete triples. Prefixes are automatically extracted
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from the RDFGraph's namespace bindings (from @prefix declarations in Turtle).
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"""
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type: TypingLiteral["insert", "delete"] = Field(
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description="Type of operation: 'insert' to add triples, 'delete' to remove triples"
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)
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graph: Annotated[
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RDFGraph,
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BeforeValidator(
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lambda v: RDFGraph._from_turtle_str(v) if isinstance(v, str) else v
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),
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] = Field(
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default_factory=RDFGraph,
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description="RDF graph containing triples to insert or delete. "
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"Must be provided as a Turtle format string or RDFGraph instance. "
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'Example Turtle: "@prefix ex: <http://example.org/> . ex:John a ex:Person ; rdfs:label "John Doe" ."',
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)
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prefixes: dict[str, str] = Field(
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default_factory=dict,
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description="Optional: Additional or override prefixes. "
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"Prefixes are automatically extracted from the RDFGraph's namespace bindings. "
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"Standard prefixes from COMMON_PREFIXES in constants.py (rdf, rdfs, owl, xsd, dc, dcterms, skos, foaf, schema, prov, ex) are automatically available. "
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"This field can be used to add or override prefixes if needed. "
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"Mapping format: {'prefix_name': 'namespace_uri'}. Example: {'fca': 'http://example.org/ontologies/fca#'}",
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)
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class GenericSparqlQuery(BaseModel):
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"""Operation for custom SPARQL queries that go beyond basic insert/delete operations.
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This operation allows for complex SPARQL queries that cannot be expressed
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using the structured operations. Use this when you need custom SPARQL syntax,
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complex WHERE clauses, or operations that don't fit the basic patterns.
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"""
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type: TypingLiteral["sparql_query"] = Field(
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default="sparql_query",
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description="Type of operation - always 'sparql_query' for this operation",
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)
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query: str = Field(
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description="The complete SPARQL query string with proper syntax"
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)
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class GraphUpdate(BaseModel):
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"""Structured representation of RDF graph updates for LLM output.
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This model represents ontology updates as a structured set of operations.
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Each operation in the list is executed in order to modify the graph.
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"""
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triple_operations: list[TripleOp] = Field(
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default_factory=list,
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description="List of graph update operations in execution order. "
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"Each operation should be a TripleOp (for insert/delete) with RDFGraph containing triples in Turtle format."
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"Example: [TripleOp(type='insert', graph='@prefix ex: <http://example.org/> . ex:John a ex:Person .', prefixes={'ex': 'http://example.org/'})]",
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)
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sparql_operations: list[GenericSparqlQuery] = Field(
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default_factory=list,
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description="List of graph update operations in execution order. "
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"Each operation should be a GenericSparqlQuery for complex custom queries. ",
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)
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def generate_sparql_queries(self) -> list[str]:
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"""Generate a list of SPARQL queries to execute the graph update.
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Returns:
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List of SPARQL query strings that can be executed to perform the update.
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The queries are generated in the exact order of operations in the operations list.
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"""
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queries = []
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# Process triple operations first
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for op in self.triple_operations:
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if len(op.graph) > 0: # Only generate query if there are triples
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# Build prefix block for this operation
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# Start with standard prefixes from COMMON_PREFIXES
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prefixes = STANDARD_PREFIXES.copy()
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# Extract prefixes from RDFGraph's namespace bindings
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for prefix, uri in op.graph.namespaces():
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if prefix: # Skip empty prefix
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prefixes[prefix] = str(uri)
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# Add custom prefixes declared in this operation (may override standard ones)
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prefixes.update(op.prefixes)
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# Generate PREFIX declarations block
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if prefixes:
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prefix_declarations = []
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for prefix, uri in prefixes.items():
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prefix_declarations.append(f"PREFIX {prefix}: <{uri}>")
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prefix_block = "\n".join(prefix_declarations)
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else:
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prefix_block = ""
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# Generate query based on operation type
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if op.type == "insert":
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triple_query = self._generate_insert_query(op.graph, prefix_block)
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else: # delete
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triple_query = self._generate_delete_query(op.graph, prefix_block)
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queries.append(triple_query)
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# Process SPARQL operations
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for op in self.sparql_operations:
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if op.query.strip(): # Only generate query if there's content
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# For custom SPARQL queries, use them as-is
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queries.append(op.query)
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return queries
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def count_total_triples(self) -> tuple[int, int]:
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"""Count total triples across all operations.
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Returns:
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Tuple of (total_operations, total_triples) where:
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- total_operations: Number of operations
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- total_triples: Total number of triples across all TripleOp operations
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"""
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total_triples = 0
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for op in self.triple_operations:
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if isinstance(op, TripleOp):
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total_triples += len(op.graph)
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return (len(self.triple_operations), total_triples)
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def extract_insert_graph(self) -> RDFGraph:
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"""Extract RDFGraph of all insert triples from triple_operations.
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Only TripleOps with type='insert' are included. sparql_operations
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are not extractable as triples and are skipped.
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Returns:
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RDFGraph containing the union of all insert triples.
|
||
|
|
"""
|
||
|
|
result = RDFGraph()
|
||
|
|
for op in self.triple_operations:
|
||
|
|
if isinstance(op, TripleOp) and op.type == "insert" and len(op.graph) > 0:
|
||
|
|
for triple in op.graph:
|
||
|
|
result.add(triple)
|
||
|
|
for prefix, uri in op.graph.namespaces():
|
||
|
|
if prefix:
|
||
|
|
result.bind(prefix, uri)
|
||
|
|
for prefix, uri in op.prefixes.items():
|
||
|
|
result.bind(prefix, uri)
|
||
|
|
return result
|
||
|
|
|
||
|
|
def generate_diff_summary(self) -> str:
|
||
|
|
"""Generate a human-readable diff summary of all operations for LLM consumption.
|
||
|
|
|
||
|
|
Returns:
|
||
|
|
String representation of all operations showing what will be added, removed, and modified.
|
||
|
|
Returns empty string if no operations to perform.
|
||
|
|
"""
|
||
|
|
if not self.triple_operations:
|
||
|
|
return ""
|
||
|
|
|
||
|
|
diff_parts = []
|
||
|
|
operation_count = 0
|
||
|
|
|
||
|
|
for i, op in enumerate(self.triple_operations, 1):
|
||
|
|
if isinstance(op, TripleOp):
|
||
|
|
if len(op.graph) > 0:
|
||
|
|
op_type = op.type.upper()
|
||
|
|
diff_parts.append(f"{i}. {op_type} {len(op.graph)} triple(s):")
|
||
|
|
|
||
|
|
# Show prefixes from graph and explicit prefixes
|
||
|
|
graph_prefixes = {
|
||
|
|
prefix: str(uri)
|
||
|
|
for prefix, uri in op.graph.namespaces()
|
||
|
|
if prefix
|
||
|
|
}
|
||
|
|
all_prefixes = {**graph_prefixes, **op.prefixes}
|
||
|
|
if all_prefixes:
|
||
|
|
prefix_list = ", ".join(
|
||
|
|
[f"{k}: {v}" for k, v in all_prefixes.items()]
|
||
|
|
)
|
||
|
|
diff_parts.append(f" Prefixes: {prefix_list}")
|
||
|
|
|
||
|
|
for subject, predicate, obj in op.graph:
|
||
|
|
symbol = "+" if op.type == "insert" else "-"
|
||
|
|
diff_parts.append(
|
||
|
|
f" {symbol} {self._serialize_rdf_term(subject)} {self._serialize_rdf_term(predicate)} {self._serialize_rdf_term(obj)}"
|
||
|
|
)
|
||
|
|
operation_count += 1
|
||
|
|
|
||
|
|
elif isinstance(op, GenericSparqlQuery):
|
||
|
|
if op.query.strip():
|
||
|
|
# Truncate long queries for readability
|
||
|
|
query_preview = op.query.strip()
|
||
|
|
if len(query_preview) > 100:
|
||
|
|
query_preview = query_preview[:97] + "..."
|
||
|
|
diff_parts.append(f"{i}. CUSTOM SPARQL QUERY:")
|
||
|
|
diff_parts.append(f" {query_preview}")
|
||
|
|
operation_count += 1
|
||
|
|
|
||
|
|
if operation_count == 0:
|
||
|
|
return ""
|
||
|
|
|
||
|
|
summary = f"Ontology Update Summary ({operation_count} operation(s)):\n\n"
|
||
|
|
summary += "\n".join(diff_parts)
|
||
|
|
|
||
|
|
return summary
|
||
|
|
|
||
|
|
def _generate_insert_query(self, graph: RDFGraph, prefix_block: str) -> str:
|
||
|
|
"""Generate a SPARQL INSERT query for the given RDFGraph."""
|
||
|
|
if len(graph) == 0:
|
||
|
|
return ""
|
||
|
|
|
||
|
|
# Format triples for SPARQL using proper RDF term serialization
|
||
|
|
triple_patterns = []
|
||
|
|
for subject, predicate, obj in graph:
|
||
|
|
triple_patterns.append(
|
||
|
|
f" {self._serialize_rdf_term(subject)} {self._serialize_rdf_term(predicate)} {self._serialize_rdf_term(obj)} ."
|
||
|
|
)
|
||
|
|
|
||
|
|
triples_block = "\n".join(triple_patterns)
|
||
|
|
|
||
|
|
query_parts = []
|
||
|
|
if prefix_block:
|
||
|
|
query_parts.append(prefix_block)
|
||
|
|
query_parts.append("INSERT DATA {")
|
||
|
|
query_parts.append(triples_block)
|
||
|
|
query_parts.append("}")
|
||
|
|
|
||
|
|
return "\n".join(query_parts)
|
||
|
|
|
||
|
|
def _generate_delete_query(self, graph: RDFGraph, prefix_block: str) -> str:
|
||
|
|
"""Generate a SPARQL DELETE query for the given RDFGraph."""
|
||
|
|
if len(graph) == 0:
|
||
|
|
return ""
|
||
|
|
|
||
|
|
# Format triples for SPARQL using proper RDF term serialization
|
||
|
|
triple_patterns = []
|
||
|
|
for subject, predicate, obj in graph:
|
||
|
|
triple_patterns.append(
|
||
|
|
f" {self._serialize_rdf_term(subject)} {self._serialize_rdf_term(predicate)} {self._serialize_rdf_term(obj)} ."
|
||
|
|
)
|
||
|
|
|
||
|
|
triples_block = "\n".join(triple_patterns)
|
||
|
|
|
||
|
|
query_parts = []
|
||
|
|
if prefix_block:
|
||
|
|
query_parts.append(prefix_block)
|
||
|
|
query_parts.append("DELETE DATA {")
|
||
|
|
query_parts.append(triples_block)
|
||
|
|
query_parts.append("}")
|
||
|
|
|
||
|
|
return "\n".join(query_parts)
|
||
|
|
|
||
|
|
def _serialize_rdf_term(self, term: Node) -> str:
|
||
|
|
"""Serialize an RDF term to its SPARQL string representation."""
|
||
|
|
if isinstance(term, URIRef):
|
||
|
|
# Check if it's already a prefixed name (contains ':')
|
||
|
|
if ":" in str(term) and not str(term).startswith("http"):
|
||
|
|
return str(term)
|
||
|
|
else:
|
||
|
|
return f"<{term}>"
|
||
|
|
elif isinstance(term, BNode):
|
||
|
|
return f"_:{term}"
|
||
|
|
elif isinstance(term, Literal):
|
||
|
|
# Handle language-tagged literals first
|
||
|
|
if term.language:
|
||
|
|
return f'"{term}"@{term.language}'
|
||
|
|
elif term.datatype:
|
||
|
|
return f'"{term}"^^<{term.datatype}>'
|
||
|
|
else:
|
||
|
|
return f'"{term}"'
|
||
|
|
else:
|
||
|
|
# Fallback to string representation
|
||
|
|
return str(term)
|